Computational Molecular Biology, aka Algorithms for Computational Biology

Syllabus

Time and place

Monday, Wednesday, Friday: 2:50-4:20 PM, fourth floor classroom, room 4001B, 4515 Scott-McKinley Research building

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Schedule

Date Teacher Topics Module Guides
Aug 27 Class overview + Mathematica 1: bring laptops! Mathematica Module
Aug 29 Mathematica 2
Aug 31 Mathematica 3
Sep 3 No class Labor Day
Sep 5 Probability 1 Probability Module
Sep 7 Probability 2
Sep 10 Probability 3
Sep 12 Probability 4
Sep 14 Probability 5
Sep 17 Probability 6
Sep 19 No class Yom Kippur
Sep 21 Probability 7
Sep 24 TF Binding Motifs 1 Motif Module
Sep 26 TF Binding Motifs 2
Sep 28 No class C&SB/MGG retreat
Oct 1 TF Binding Motifs 3
Oct 3 TF Binding Motifs 4
Oct 5 TF Binding Motifs 5
Oct 8 HMMs 1 HMM Module Guide
Oct 10 HMMs 2
Oct 12 HMMs 3
Oct 15 No Class Fall Break
Oct 17 HMMs 4
Oct 19 HMMs 5
Oct 22 HMMs 6
Oct 24 Alignment / Profile HMMs 1 Profile HMMs
Oct 26 Alignment / Profile HMMs 2
Oct 29 Alignment / Profile HMMs 3
Oct 31 Alignment / Profile HMMs 4
Nov 2 Regulatory Network inference 1 TF Network Module
Nov 5 Regulatory Network inference 2
Nov 7 Regulatory Network inference 3
Nov 9 Regulatory Network inference 4
Nov 12 Regulatory Network inference 5
Nov 14 Regulatory Network inference 6
Nov 16 Modeling gene regulation dynamics 1 SysBio Guide
Nov 19 Modeling gene regulation dynamics 2
Nov 21 No class Thanksgiving holiday
Nov 23 No class Thanksgiving holiday
Nov 26 Modeling gene regulation dynamics 3
Nov 28 Modeling gene regulation dynamics 4
Nov 30 Modeling gene regulation dynamics 5
Dec 3 Modeling gene regulation dynamics 6
Dec 5 Modeling gene regulation dynamics 7
Dec 7 Modeling gene regulation dynamics 8