Computational Molecular Biology, aka Algorithms for Computational Biology

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Syllabus

Time and place

Monday, Wednesday, Friday: 2:45-4:15 PM, fourth floor classroom, room 4001B, 4515 Scott-McKinley Research building

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Schedule

Date Teacher Topics Module Guides
Aug 29 Class overview + Mathematica 1: bring laptops! Mathematica Module
Aug 31 Mathematica 2
Sep 2 Mathematica 3
Sep 5 No class Labor Day
Sep 7 Probability 1 Probability Module
Sep 9 Probability 2
Sep 12 Probability 3
Sep 14 Probability 4
Sep 16 Probability 5
Sep 19 Probability 6
Sep 21 Probability 7
Sep 23 Probability 8
Sep 26 TF Binding Motifs 1 Motif Module
Sep 28 TF Binding Motifs 2
Sep 30 TF Binding Motifs 3
Oct 3 TF Binding Motifs 4
Oct 5 TF Binding Motifs 5
Oct 7 HMMs 1 HMM Module Guide
Oct 10 HMMs 2
Oct 12 No class Yom Kippur
Oct 14 HMMs 3
Oct 17 No Class Fall Break
Oct 19 HMMs 4
Oct 21 HMMs 5
Oct 24 HMMs 6
Oct 26 Alignment / Profile HMMs 1 Profile HMMs
Oct 28 No class C&SB/MGG retreat
Oct 31 Alignment / Profile HMMs 2
Nov 2 Alignment / Profile HMMs 3
Nov 4 Alignment / Profile HMMs 4
Nov 7 Regulatory Network inference 1 TF Network Module
Nov 9 Regulatory Network inference 2
Nov 11 Regulatory Network inference 3
Nov 14 Regulatory Network inference 4
Nov 16 Regulatory Network inference 5
Nov 18 Modeling gene regulation dynamics 1 SysBio Guide
Nov 21 Modeling gene regulation dynamics 2
Nov 23 No class Thanksgiving holiday
Nov 25 No class Thanksgiving holiday
Nov 28 Modeling gene regulation dynamics 3
Nov 30 Modeling gene regulation dynamics 4
Dec 2 Modeling gene regulation dynamics 5
Dec 5 Modeling gene regulation dynamics 6
Dec 7 Modeling gene regulation dynamics 7
Dec 9 Modeling gene regulation dynamics 8