logo

Computational Molecular Biology, aka Algorithms for Computational Biology

Home * Syllabus * Course Information * Readings and Resources * Lecturers, TAs, Office Hours * Homework Submission

Syllabus

Time and place

Monday, Wednesday, Friday: 2:45-4:15 PM, fifth floor classroom, room 5206, 4444 Forest Park Boulevard building

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Schedule

Date Teacher Topics Module Guides
Aug 24 Class overview + Mathematica 1: bring laptops! Mathematica Module
Aug 26 Mathematica 2
Aug 28 Mathematica 3
Aug 31 Probability 1 Probability Module
Sep 2 Probability 2
Sep 4 Probability 3
Sep 7 No class Labor Day
Sep 9 Probability 4
Sep 11 Probability 5
Sep 14 Probability 6
Sep 16 Probability 7
Sep 18 No class C&SB/MGG retreat
Sep 21 Probability 8
Sep 23 TF Binding Motifs 1 Motif Module
Sep 25 TF Binding Motifs 2
Sep 28 TF Binding Motifs 3
Sep 30 TF Binding Motifs 4
Oct 2 TF Binding Motifs 5
Oct 5 HMMs 1 HMM Module Guide
Oct 7 HMMs 2
Oct 9 HMMs 3
Oct 12 HMMs 4
Oct 14 HMMs 5
Oct 16 No Class Fall Break
Oct 19 HMMs 6
Oct 21 Alignment / Profile HMMs 1 Profile HMMs
Oct 23 Alignment / Profile HMMs 2
Oct 26 Alignment / Profile HMMs 3
Oct 28 Alignment / Profile HMMs 4
Oct 30 Regulatory Network inference 1 TF Network Module
Nov 2 Regulatory Network inference 2
Nov 4 Regulatory Network inference 3
Nov 6 Regulatory Network inference 4
Nov 9 Regulatory Network inference 5
Nov 11 Modeling gene regulation dynamics 1 SysBio Guide
Nov 13 Modeling gene regulation dynamics 2
Nov 16 Modeling gene regulation dynamics 3
Nov 18 Modeling gene regulation dynamics 4
Nov 20 Modeling gene regulation dynamics 5
Nov 23 Modeling gene regulation dynamics 6
Nov 25 No class Thanksgiving holiday
Nov 27 No class Thanksgiving holiday
Nov 30 Modeling gene regulation dynamics 7
Dec 2 Modeling gene regulation dynamics 8
Dec 4 TBD