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Computational Molecular Biology, aka Algorithms for Computational Biology

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Syllabus

Time and place

Monday, Wednesday, Friday: 2:45-4:15 PM, fifth floor classroom, room 5206, 4444 Forest Park Boulevard building

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Schedule

Date Teacher Topics Module Guides
Aug 25 Class overview + Mathematica 1: bring laptops! Mathematica Module
Aug 27 Mathematica 2
Aug 29 Mathematica 3
Sep 1 No class Labor Day
Sep 3 Probability 1 Probability Module
Sep 5 Probability 2
Sep 8 Probability 3
Sep 10 Probability 4
Sep 12 Probability 5
Sep 15 Probability 6
Sep 17 Probability 7
Sep 19 No class C&SB/MGG retreat
Sep 22 Probability 8
Sep 24 TF Binding Motifs 1 Motif Module
Sep 26 TF Binding Motifs 2
Sep 29 TF Binding Motifs 3
Oct 1 TF Binding Motifs 4
Oct 3 Regulatory Network inference 1 TF Network Module
Oct 6 Regulatory Network inference 2
Oct 8 Regulatory Network inference 3
Oct 10 Regulatory Network inference 4
Oct 13 Regulatory Network inference 5
Oct 15 HMMs 1 HMM Module Guide
Oct 17 No Class Fall Break
Oct 20 HMMs 2
Oct 22 TFN Workshop
Oct 24 TF network project presentations
Oct 27 HMMs 3
Oct 29 HMMs 4
Oct 31 HMMs 5
Nov 3 Profile HMMs 1 Profile HMMs
Nov 5 Profile HMMs 2
Nov 7 Profile HMMs 3
Nov 10 No class Class canceled
Nov 12 Modeling gene regulation dynamics 1 SysBio Guide
Nov 14 Modeling gene regulation dynamics 2
Nov 17 Modeling gene regulation dynamics 3
Nov 19 Modeling gene regulation dynamics 4
Nov 21 Modeling gene regulation dynamics 5
Nov 24 Modeling gene regulation dynamics 6
Nov 26 No class Thanksgiving holiday
Nov 28 No class Thanksgiving holiday
Dec 1 Modeling gene regulation dynamics 7
Dec 3 Modeling gene regulation dynamics 8
Dec 5 TBD