## Computational Molecular Biology, aka Algorithms for Computational Biology |

**Monday, Wednesday, Friday: 2:50-4:20 PM, fourth floor classroom,
room 4001B, 4515 Scott-McKinley Research building**

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Date | Teacher | Topics | Module Guides |
---|---|---|---|

Aug 29 | Class overview + Mathematica 1: bring laptops! | Mathematica Module | |

Aug 31 | Mathematica 2 | ||

Sep 2 | Mathematica 3 | ||

Sep 5 | No class | Labor Day | |

Sep 7 | Probability 1 | Probability Module | |

Sep 9 | Probability 2 | ||

Sep 12 | Probability 3 | ||

Sep 14 | Probability 4 | ||

Sep 16 | Probability 5 | ||

Sep 19 | Probability 6 | ||

Sep 21 | Probability 7 | ||

Sep 23 | Probability 8 | ||

Sep 26 | TF Binding Motifs 1 | Motif Module | |

Sep 28 | TF Binding Motifs 2 | ||

Sep 30 | TF Binding Motifs 3 | ||

Oct 3 | TF Binding Motifs 4 | ||

Oct 5 | TF Binding Motifs 5 | ||

Oct 7 | HMMs 1 | HMM Module Guide | |

Oct 10 | HMMs 2 | ||

Oct 12 | No class | Yom Kippur | |

Oct 14 | HMMs 3 | ||

Oct 17 | No Class | Fall Break | |

Oct 19 | HMMs 4 | ||

Oct 21 | HMMs 5 | ||

Oct 24 | HMMs 6 | ||

Oct 26 | Alignment / Profile HMMs 1 | Profile HMMs | |

Oct 28 | No class | C&SB/MGG retreat | |

Oct 31 | Alignment / Profile HMMs 2 | ||

Nov 2 | Alignment / Profile HMMs 3 | ||

Nov 4 | Alignment / Profile HMMs 4 | ||

Nov 7 | Regulatory Network inference 1 | TF Network Module | |

Nov 9 | Regulatory Network inference 2 | ||

Nov 11 | Regulatory Network inference 3 | ||

Nov 14 | Regulatory Network inference 4 | ||

Nov 16 | Regulatory Network inference 5 | ||

Nov 18 | Modeling gene regulation dynamics 1 | SysBio Guide | |

Nov 21 | Modeling gene regulation dynamics 2 | ||

Nov 23 | No class | Thanksgiving holiday | |

Nov 25 | No class | Thanksgiving holiday | |

Nov 28 | Modeling gene regulation dynamics 3 | ||

Nov 30 | Modeling gene regulation dynamics 4 | ||

Dec 2 | Modeling gene regulation dynamics 5 | ||

Dec 5 | Modeling gene regulation dynamics 6 | ||

Dec 7 | Modeling gene regulation dynamics 7 | ||

Dec 9 | Modeling gene regulation dynamics 8 |