Computational Molecular Biology, aka Algorithms for Computational Biology

Syllabus

Time and place

Monday, Wednesday, Friday: 2:50-4:20 PM, fourth floor classroom, room 4001B, 4515 Scott-McKinley Research building

All meetings may include some lecture style presentation and/or in-class collaborative learning.

Schedule

Date Teacher Topics Module Guides
Aug 28 Class overview + Mathematica 1: bring laptops! Mathematica Module
Aug 30 Mathematica 2
Sep 1 Mathematica 3
Sep 4 No class Labor Day
Sep 6 Probability 1 Probability Module
Sep 8 Probability 2
Sep 11 Probability 3
Sep 13 Probability 4
Sep 15 Probability 5
Sep 18 Probability 6
Sep 20 Probability 7
Sep 22 Probability 8
Sep 25 TF Binding Motifs 1 Motif Module
Sep 27 TF Binding Motifs 2
Sep 29 No class C&SB/MGG retreat
Oct 2 TF Binding Motifs 3
Oct 4 TF Binding Motifs 4
Oct 6 TF Binding Motifs 5
Oct 9 HMMs 1 HMM Module Guide
Oct 11 HMMs 2
Oct 13 HMMs 3
Oct 16 No Class Fall Break
Oct 18 HMMs 4
Oct 20 HMMs 5
Oct 23 HMMs 6
Oct 25 Alignment / Profile HMMs 1 Profile HMMs
Oct 27 Alignment / Profile HMMs 2
Oct 30 Alignment / Profile HMMs 3
Nov 1 Alignment / Profile HMMs 4
Nov 3 Regulatory Network inference 1 TF Network Module
Nov 6 Regulatory Network inference 2
Nov 8 Regulatory Network inference 3
Nov 10 Regulatory Network inference 4
Nov 13 Regulatory Network inference 5
Nov 15 Regulatory Network inference 6
Nov 17 Modeling gene regulation dynamics 1 SysBio Guide
Nov 20 Modeling gene regulation dynamics 2
Nov 22 No class Thanksgiving holiday
Nov 24 No class Thanksgiving holiday
Nov 27 Modeling gene regulation dynamics 3
Nov 29 Modeling gene regulation dynamics 4
Dec 1 Modeling gene regulation dynamics 5
Dec 4 Modeling gene regulation dynamics 6
Dec 6 Modeling gene regulation dynamics 7
Dec 8 Modeling gene regulation dynamics 8